PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G059700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 281aa    MW: 31124.1 Da    PI: 8.3624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G059700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+ ++k +G g+W++ +r  g+ R++k+c++rw +yl
  Sevir.8G059700.1.p 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPRAAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP

2Myb_DNA-binding58.41.6e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++ ++++G++ W++Ia +++ gRt++++k++w+++
  Sevir.8G059700.1.p  67 RGNFTEEEDELIIKFHELFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.057961IPR017930Myb domain
SMARTSM007179.4E-141363IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-3013108IPR009057Homeodomain-like
PfamPF002495.3E-151461IPR001005SANT/Myb domain
CDDcd001678.84E-111661No hitNo description
PROSITE profilePS5129428.68462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2865117IPR009057Homeodomain-like
SMARTSM007174.0E-1866114IPR001005SANT/Myb domain
PfamPF002497.6E-1767111IPR001005SANT/Myb domain
CDDcd001671.21E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRSPCCEQA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PRAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK FHELFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLVARG  120
IDPQTHRPIA AAASGAPGQQ QQQHYQLEAP KLHAAAAPGH HHQQDHFEVI SNSPEACSRS  180
SDDEPRSATP PPPPAPPRRH LDIDLNLSIS LAPYEPPEDS FKPLKQEAAA TAGHGNATAA  240
VCLCLNSLGY RPGVECVCGA ARQEQWARNF LQAAPCYRGQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0696561e-173BT069656.1 Zea mays full-length cDNA clone ZM_BFb0205E08 mRNA, complete cds.
GenBankKJ7268021e-173KJ726802.1 Zea mays clone pUT3029 MYB transcription factor (MYB67) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978868.10.0PREDICTED: myb-related protein Zm38
SwissprotQ9SZP15e-94MYB4_ARATH; Transcription repressor MYB4
TrEMBLK3ZJI10.0K3ZJI1_SETIT; Uncharacterized protein
STRINGSi026734m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-88myb domain protein 4